Group II Intron References
Popular Science
Wickelgren, I. Molecular biology. Spinning junk into gold. Science (New York, N.Y.) 300, 16469 (2003). Pubmed
Zagorski, N. Profile of Alan M. Lambowitz. Proceedings of the National Academy of Sciences of the United States of America 103, 166971 (2006). Pubmed
TargeTron Review
Lambowitz, A. M. & Zimmerly, S. Group II introns: mobile ribozymes that invade DNA. Cold Spring Harbor perspectives in biology 3, a003616 (2011). Pubmed
TargeTron Design
Perutka, J., Wang, W., Goerlitz, D. & Lambowitz, A. M. Use of computer-designed group II introns to disrupt Escherichia coli DExH/D-box protein and DNA helicase genes. Journal of molecular biology 336, 42139 (2004). Pubmed
Zhuang, F., Karberg, M., Perutka, J. & Lambowitz, A. M. EcI5, a group IIB intron with high retrohoming frequency: DNA target site recognition and use in gene targeting. RNA (New York, N.Y.) 15, 43249 (2009). Pubmed
Database for mobile group II introns
Candales, M. A. et al. Database for bacterial group II introns. Nucleic acids research 40, D18790 (2012). Pubmed The database can be accessed here
Clostridium perfringens
Chen, Y., McClane, B. A., Fisher, D. J., Rood, J. I. & Gupta, P. Construction of an alpha toxin gene knockout mutant of Clostridium perfringens type A by use of a mobile group II intron. Applied and environmental microbiology 71, 75427 (2005). Pubmed
Clostridium difficile & Clostridium botulinum
Heap, J. T., Pennington, O. J., Cartman, S. T., Carter, G. P. & Minton, N. P. The ClosTron: a universal gene knock-out system for the genus Clostridium. Journal of microbiological methods 70, 45264 (2007). Pubmed
Clostridium acetobutylicum
Shao, L. et al. Targeted gene disruption by use of a group II intron (targetron) vector in Clostridium acetobutylicum. Cell research 17, 9635 (2007). Pubmed
Clostridium phytofermentans
Tolonen, A. C., Chilaka, A. C. & Church, G. M. Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367. Molecular microbiology 74, 130013 (2009). Pubmed
Staphylococcus aureus
Corvaglia, A. R. et al. A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains. Proceedings of the National Academy of Sciences of the United States of America 107, 119548 (2010). Pubmed
Yao, J. et al. Use of targetrons to disrupt essential and nonessential genes in Staphylococcus aureus reveals temperature sensitivity of Ll.LtrB group II intron splicing. RNA (New York, N.Y.) 12, 127181 (2006). Pubmed
Francisella tularensis
Rodriguez, S. A., Yu, J.-J., Davis, G., Arulanandam, B. P. & Klose, K. E. Targeted inactivation of francisella tularensis genes by group II introns. Applied and environmental microbiology 74, 261926 (2008). Pubmed
Lactococcus lactis
Frazier, C. L., San Filippo, J., Lambowitz, A. M. & Mills, D. A. Genetic manipulation of Lactococcus lactis by using targeted group II introns: generation of stable insertions without selection. Applied and environmental microbiology 69, 11218 (2003). Pubmed
Broad-Host-Range Targetron Vector
Yao, J. & Lambowitz, A. M. Gene targeting in gram-negative bacteria by use of a mobile group II intron (Targetron) expressed from a broad-host-range vector. Applied and environmental microbiology 73, 273543 (2007). Pubmed
RAM-Targetron
Zhong, J., Karberg, M. & Lambowitz, A. M. Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker. Nucleic acids research 31, 165664 (2003). Pubmed
Eukaryotes
Mastroianni, M. et al. Group II intron-based gene targeting reactions in eukaryotes. PloS one 3, e3121 (2008). Pubmed
Wickelgren, I. Molecular biology. Spinning junk into gold. Science (New York, N.Y.) 300, 16469 (2003). Pubmed
Zagorski, N. Profile of Alan M. Lambowitz. Proceedings of the National Academy of Sciences of the United States of America 103, 166971 (2006). Pubmed
TargeTron Review
Lambowitz, A. M. & Zimmerly, S. Group II introns: mobile ribozymes that invade DNA. Cold Spring Harbor perspectives in biology 3, a003616 (2011). Pubmed
TargeTron Design
Perutka, J., Wang, W., Goerlitz, D. & Lambowitz, A. M. Use of computer-designed group II introns to disrupt Escherichia coli DExH/D-box protein and DNA helicase genes. Journal of molecular biology 336, 42139 (2004). Pubmed
Zhuang, F., Karberg, M., Perutka, J. & Lambowitz, A. M. EcI5, a group IIB intron with high retrohoming frequency: DNA target site recognition and use in gene targeting. RNA (New York, N.Y.) 15, 43249 (2009). Pubmed
Database for mobile group II introns
Candales, M. A. et al. Database for bacterial group II introns. Nucleic acids research 40, D18790 (2012). Pubmed The database can be accessed here
Clostridium perfringens
Chen, Y., McClane, B. A., Fisher, D. J., Rood, J. I. & Gupta, P. Construction of an alpha toxin gene knockout mutant of Clostridium perfringens type A by use of a mobile group II intron. Applied and environmental microbiology 71, 75427 (2005). Pubmed
Clostridium difficile & Clostridium botulinum
Heap, J. T., Pennington, O. J., Cartman, S. T., Carter, G. P. & Minton, N. P. The ClosTron: a universal gene knock-out system for the genus Clostridium. Journal of microbiological methods 70, 45264 (2007). Pubmed
Clostridium acetobutylicum
Shao, L. et al. Targeted gene disruption by use of a group II intron (targetron) vector in Clostridium acetobutylicum. Cell research 17, 9635 (2007). Pubmed
Clostridium phytofermentans
Tolonen, A. C., Chilaka, A. C. & Church, G. M. Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367. Molecular microbiology 74, 130013 (2009). Pubmed
Staphylococcus aureus
Corvaglia, A. R. et al. A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains. Proceedings of the National Academy of Sciences of the United States of America 107, 119548 (2010). Pubmed
Yao, J. et al. Use of targetrons to disrupt essential and nonessential genes in Staphylococcus aureus reveals temperature sensitivity of Ll.LtrB group II intron splicing. RNA (New York, N.Y.) 12, 127181 (2006). Pubmed
Francisella tularensis
Rodriguez, S. A., Yu, J.-J., Davis, G., Arulanandam, B. P. & Klose, K. E. Targeted inactivation of francisella tularensis genes by group II introns. Applied and environmental microbiology 74, 261926 (2008). Pubmed
Lactococcus lactis
Frazier, C. L., San Filippo, J., Lambowitz, A. M. & Mills, D. A. Genetic manipulation of Lactococcus lactis by using targeted group II introns: generation of stable insertions without selection. Applied and environmental microbiology 69, 11218 (2003). Pubmed
Broad-Host-Range Targetron Vector
Yao, J. & Lambowitz, A. M. Gene targeting in gram-negative bacteria by use of a mobile group II intron (Targetron) expressed from a broad-host-range vector. Applied and environmental microbiology 73, 273543 (2007). Pubmed
RAM-Targetron
Zhong, J., Karberg, M. & Lambowitz, A. M. Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker. Nucleic acids research 31, 165664 (2003). Pubmed
Eukaryotes
Mastroianni, M. et al. Group II intron-based gene targeting reactions in eukaryotes. PloS one 3, e3121 (2008). Pubmed